PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO78506

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 375aa MW: 42197 Da PI: 5.4242

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO78506	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00086	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C ksF + L H+r+H OMO78506 4 HRCKLCFKSFANGRALGGHMRSH 26 79********************9 PP
2	zf-C2H2	14.1	0.00014	241	263	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H OMO78506 241 YRCETCNKVFKSYQALGGHRASH 263 9************9999998887 PP
3	zf-C2H2	11.4	0.001	296	318	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H OMO78506 296 HECPVCFRVFSSGQALGGHKRSH 318 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MEKHRCKLCF KSFANGRALG GHMRSHMLNL PVPPPPKVVV EEQERPEPPR NQPSEASEAA 60 SASAPSSSSE DEGDEKGQLN YGLRENPKRS VRLVDPEFVD AGSVVLQDRE SETESSKNPT 120 RRRSKRTRKI LQQQQQEETK KLKVINYKQL MVSKTESWGA EPEPVSSISD TTTEEDVAFC 180 LMMLSRDQWK RRVNQKEEDE EEDDDADEEE ETEIEKSMEE TDESEEYFKV SKVNRTSRGK 240 YRCETCNKVF KSYQALGGHR ASHKKIKAGY NSVATRGTEL EPENVATCSM TQKKIHECPV 300 CFRVFSSGQA LGGHKRSHVT GQVVATSEIT PVRSSKKLGD SLIDLNLPAP MDDDDVSQIE 360 LSAVSDAEFV NHIKC

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MEKHRCKLCF KSFANGRALG GHMRSHMLNL PVPPPPKVVV EEQERPEPPR NQPSEASEAA  60
SASAPSSSSE DEGDEKGQLN YGLRENPKRS VRLVDPEFVD AGSVVLQDRE SETESSKNPT  120
RRRSKRTRKI LQQQQQEETK KLKVINYKQL MVSKTESWGA EPEPVSSISD TTTEEDVAFC  180
LMMLSRDQWK RRVNQKEEDE EEDDDADEEE ETEIEKSMEE TDESEEYFKV SKVNRTSRGK  240
YRCETCNKVF KSYQALGGHR ASHKKIKAGY NSVATRGTEL EPENVATCSM TQKKIHECPV  300
CFRVFSSGQA LGGHKRSHVT GQVVATSEIT PVRSSKKLGD SLIDLNLPAP MDDDDVSQIE  360
LSAVSDAEFV NHIKC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	143	RRRSKRTRKILQQQQQEETKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	6e-66	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO78506