PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78542
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family YABBY
Protein Properties Length: 213aa    MW: 23510.9 Da    PI: 8.1575
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78542genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY242.11.1e-74111762170
     YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvssek 100
               d+ s s+q+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+llsvn++      a + hl++s+  +  llee +++  nl  n+ + + +    ++  
  OMO78542  11 DHLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGHSFFTPqnLLEEIRSAPPNLLINQPNPNDSI--LPA-- 107
               78899*****************************************999999998899999999987654589999999999888776655443..333.. PP

     YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 +   ee+p++p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  OMO78542 108 -IRGGVEEIPKPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 176
               .357889****999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MSSSSAAFSP DHLSPSDQLC YVHCNFCDTV LAVSVPCTSL FKTVTVRCGH CTNLLSVNMR  60
GLLLPAANQL HLGHSFFTPQ NLLEEIRSAP PNLLINQPNP NDSILPAIRG GVEEIPKPPV  120
VNRPPEKRQR VPSAYNRFIK DEIQRIKAGN PDISHREAFS AAAKNWAHFP HIHFGLMPDQ  180
PVKKTNVRQQ EGEDVLMKDG FFAAPTNVGI APY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-99YABBY family protein