PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78581
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 204aa    MW: 22264.2 Da    PI: 7.8559
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78581genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.21.6e-39111111100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +C aCk+lrrkC+k+C++apyf +eq +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+v++i++lqqq+ +l+aela+++++
  OMO78581  11 PCGACKFLRRKCVKGCIFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPAHKRVDAVVTLCYEALARVRDPVYGCVAHIFTLQQQVVNLQAELAYIQAR 111
               7***********************9989********************************************************************99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MSGNNGGGGG PCGACKFLRR KCVKGCIFAP YFDSEQGTAH FAAVHKVFGA SNASKLLLRI  60
PAHKRVDAVV TLCYEALARV RDPVYGCVAH IFTLQQQVVN LQAELAYIQA RLSTLQRLPL  120
LPPAQSPSPT SLHSSSEIGS DLVSSSNMSI NFDPTQHQHT SFELTSFPNP FDQEVENEEE  180
LQALAREFVS RYLPGVRFRP SNSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.12e-64LBD family protein