PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO78612

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

GRF

Protein Properties

Length: 790aa MW: 86507.2 Da PI: 9.9474

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO78612	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.9	3.6e-23	137	181	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs++v++++k+CE H+hrgr+ srk++e+ OMO78612 137 DPEPGRCRRTDGKKWRCSKNVIPDQKYCEQHMHRGRHCSRKPVES 181 79***************************************9986 PP
2	WRC	62.6	6.1e-20	432	467	2	37
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrs 37 epgrCrRtDGKkWRCsr v++++k+C rH++rg OMO78612 432 LEPGRCRRTDGKKWRCSRAVIPDQKYCARHMNRGAR 467 59*******************************954 PP
3	QLQ	36.5	1.5e-13	68	102	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT aQl +L+sQ +y ++a++ PvP +L+++i+k OMO78612 68 FTKAQLRELRSQGVIYEHIARGSPVPLHLVMPIWK 102 9********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 790 aa Download sequence
MAARAVQCPT LPGECGAQER GATVEKEEKA EEEEGSPSIK LGLGVDGKVS EKEKKGGVIV 60 LTRGKCEFTK AQLRELRSQG VIYEHIARGS PVPLHLVMPI WKSVASSFDS AQGSIYEHYP 120 SFVGVSPQGF DYSNMMDPEP GRCRRTDGKK WRCSKNVIPD QKYCEQHMHR GRHCSRKPVE 180 SPQITLPDEN VSDNSNKESE NSNKLSAPVS VPCMNQPSCN SSPSKVVTAT TAIEDGCKVD 240 SKRKIISTPA TTVTATKHDK ENDCKRSKNL PNASDKGEEK LSIGDNNITQ RSSKSGTAVF 300 SAPVSVPCMK QSSCNSSPSK VVTAATAMED GCKVHSKRKI ISPPATTIST TIITATKHDK 360 KNDCKRSKNL PNASDKGEEK LSTGDNNITQ RSSKSGTAVG NRPSSGVDIS PKSVLQVTGS 420 NSSSVDKNEI ELEPGRCRRT DGKKWRCSRA VIPDQKYCAR HMNRGARKPV EVSQPVVDSS 480 TSRLKKANKV VCAAATAVTT NLSISIPSQE LSTHDESRTM VGAARRLQYP RGFLQGTRRF 540 YHSNPNNLPL PRTLTSLVQV STNSLTTIRA SRDWRAVLFT VAAGSCLLFM FGVRIERVPY 600 SNRFHFTLSN RLTNKLGSYK FGKLLANEHE FEHTDSVTVH SSDPCAIRVQ SIARKLLEGM 660 HKGLMLQNQP VIVAPKSQVN HHHKLWCKRK SHQYHLEAAA KSGESEGLVA ANQKGQNCKR 720 KLLWKPSAKH LEGKAWQVYV TDSYSGTALC LLNGKVVIGT RLLEDLKSDD EVAAVIAHEI 780 AHTVARHLGE

Sequence ? help Back to Top

Protein Sequence Length: 790 aa Download sequence

MAARAVQCPT LPGECGAQER GATVEKEEKA EEEEGSPSIK LGLGVDGKVS EKEKKGGVIV  60
LTRGKCEFTK AQLRELRSQG VIYEHIARGS PVPLHLVMPI WKSVASSFDS AQGSIYEHYP  120
SFVGVSPQGF DYSNMMDPEP GRCRRTDGKK WRCSKNVIPD QKYCEQHMHR GRHCSRKPVE  180
SPQITLPDEN VSDNSNKESE NSNKLSAPVS VPCMNQPSCN SSPSKVVTAT TAIEDGCKVD  240
SKRKIISTPA TTVTATKHDK ENDCKRSKNL PNASDKGEEK LSIGDNNITQ RSSKSGTAVF  300
SAPVSVPCMK QSSCNSSPSK VVTAATAMED GCKVHSKRKI ISPPATTIST TIITATKHDK  360
KNDCKRSKNL PNASDKGEEK LSTGDNNITQ RSSKSGTAVG NRPSSGVDIS PKSVLQVTGS  420
NSSSVDKNEI ELEPGRCRRT DGKKWRCSRA VIPDQKYCAR HMNRGARKPV EVSQPVVDSS  480
TSRLKKANKV VCAAATAVTT NLSISIPSQE LSTHDESRTM VGAARRLQYP RGFLQGTRRF  540
YHSNPNNLPL PRTLTSLVQV STNSLTTIRA SRDWRAVLFT VAAGSCLLFM FGVRIERVPY  600
SNRFHFTLSN RLTNKLGSYK FGKLLANEHE FEHTDSVTVH SSDPCAIRVQ SIARKLLEGM  660
HKGLMLQNQP VIVAPKSQVN HHHKLWCKRK SHQYHLEAAA KSGESEGLVA ANQKGQNCKR  720
KLLWKPSAKH LEGKAWQVYV TDSYSGTALC LLNGKVVIGT RLLEDLKSDD EVAAVIAHEI  780
AHTVARHLGE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	688	692	KRKSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36400.1	5e-28	GRF family protein

Link Out ? help Back to Top
Ensembl	OMO78612