PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78683
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25735.3 Da    PI: 9.8479
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78683genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF953.4e-301059251
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  OMO78683 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 59
              8***********************************************86 PP
2K-box87.33e-2978168797
     K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                + +e+++++l+ e+a++ k+ie L+ + R+llGe+L+s++l+eLqq+e+qLe+s+++iR++K+++++eqie+l++kek+l  en +L +k
  OMO78683  78 PKPNEQNMQHLKAEAANMVKKIELLEVSRRKLLGEGLGSCTLEELQQIEKQLERSVSSIRARKTQVFKEQIENLKEKEKALATENARLCEK 168
               337899********************************************************************************99887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS  60
SMQATIERYK KHTKDSRPKP NEQNMQHLKA EAANMVKKIE LLEVSRRKLL GEGLGSCTLE  120
ELQQIEKQLE RSVSSIRARK TQVFKEQIEN LKEKEKALAT ENARLCEKCG MKAWQGSNPN  180
EQMRENSNDN NVATYDHESS PSSDVETELF IGPPESRTRS FLQPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-88MIKC_MADS family protein