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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OMO78691 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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| Family | TCP | ||||||||
| Protein Properties | Length: 301aa MW: 31669.8 Da PI: 9.4455 | ||||||||
| Description | TCP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | TCP | 122.1 | 6.5e-38 | 70 | 169 | 1 | 101 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksq 101
aa+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++++a ++ +++ + + s+++ + ++++kk++
OMO78691 70 AAPKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTIPAIAM-SVNGTLKIPTTSNANPDPGDPNKKKRK 169
689*******************************************************************555.222222222222222222222222222 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 301 aa Download sequence |
MAAIQKQEVE EDEDTRAVDL SINSGGADGA AASKYPKEEP DTEAAIGVMP MAAVHVPSAL 60 PMPLATPPAA APKRASTKDR HTKVEGRGRR IRMPATCAAR IFQLTRELGH KSDGETIRWL 120 LEHAEPAIIA ATGTGTIPAI AMSVNGTLKI PTTSNANPDP GDPNKKKRKR PANSEYVDIN 180 DTVSVSSGLA PPHIFTFPAT ATPLINISAR PMSSFVSAMQ HGGVSLAAAA TPVGQLQSNV 240 AVTSSTLPAS KTVKTTSVMA PSSSSAATNT STSTTTQMLR DFSLEIYDKQ ELQFMTRSSK 300 H |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 163 | 169 | PNKKKRK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G45680.1 | 6e-59 | TCP family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OMO78691 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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