PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78882
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 152aa    MW: 17131.1 Da    PI: 9.9366
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78882genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-172877255
       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  OMO78882 28 PFRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPIAAARAYDTAVFYLRG 77
              69*****99.**********9...336*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    
MEGDCCSTSS STTSGEKRKQ RRQQKDKPFR GIRMRKWGKW VAEIREPNKR SRIWLGSYTT  60
PIAAARAYDT AVFYLRGPSA RLNFPDLILQ EDDLRDISAA SIRKKATEVG AKVDALQTSL  120
HASTSSESNS NTSRVFDKPP DLNKYPESSD ED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.13e-51ERF family protein