PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78918
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 259aa    MW: 28160.2 Da    PI: 9.5541
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78918genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08170210954
               HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  OMO78918 170 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 210
               699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MEIEQLKSAT EDQMEMMMMM QMDKLPEFFG AYNDVVELPP AEAELSPGAS NNNTSAMPHF  60
VETPPFINHL PTISFNGSTP VQEPGGAAAA VAAGFLSSPG GSARWRGGAG ELSGANAFST  120
PSQKKNSMAA MREMIFRIAA MQPIHIDPES IKPPKRRNVK ISKDPQSVAA RHRRERISER  180
IRILQRLVPG GTKMDTASML DEAIHYVKFL KTQVQSLERA AANRPTTTGL GFPVAMSNGS  240
TFLPMGKVPF QNVQQFGDA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.17e-43bHLH family protein