PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78975
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 215aa    MW: 24288.2 Da    PI: 10.2154
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78975genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.96.9e-17127211191
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
               f+k ++ps+v+   +l lp +f++++  +k ++  +tl de+g+++   + +rk++    l++GWk+F+ a++L +gD vvF+l+++++f+
  OMO78975 127 FIKSMLPSHVSGGFWLGLPVHFCKTNL-PK-RDEVMTLIDEEGEEYPTIYLVRKTG----LSGGWKGFAVAHELADGDAVVFQLVRSTTFK 211
               89*********************9884.33.5568***************777777....************************9877663 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MVVAKPKLSY EESRQKRIEE NKKRMEALNL PQLSQALRTS PFKPSPKKQS KPRIVEKQLV  60
VVRRSSRVAN LPSPVYKEVV VERVAIPRRT SKPRDLNLVY ASEEDRAEAL EKAEKLESSL  120
GTDFPIFIKS MLPSHVSGGF WLGLPVHFCK TNLPKRDEVM TLIDEEGEEY PTIYLVRKTG  180
LSGGWKGFAV AHELADGDAV VFQLVRSTTF KVIAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-65B3 family protein