PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO79009

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 255aa MW: 28732.8 Da PI: 8.3335

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO79009	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.9	1.1e-18	35	80	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+++G+++W++I+r++ gR++k+c++rw + OMO79009 35 KGPWSAEEDRILTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 80 79***************************9.*********985 PP
2	Myb_DNA-binding	54.5	2.6e-17	89	131	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ OMO79009 89 PFSQAEDETILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 131 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MNNRCSSSTS SSDTSSSESS FSARGGASNK AEKIKGPWSA EEDRILTRLV ERYGPRNWSL 60 ISRYIKGRSG KSCRLRWCNQ LSPNVEHRPF SQAEDETILA AHARYGNRWA TIARLLPGRT 120 DNAVKNHWNS TLKRRAREGQ HQQLQQQQQY QYQEQQLLLN QQEQIIGSHH QKMESTCDNN 180 ALGSVDMMMD EEALTALTLA PPGSGGVGSG SAAAEERRRD ERVPAEFWDV MRDVIAREVR 240 DYMSSTLSAE TSGFH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	3e-58	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO79009