PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO79222

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

ARF

Protein Properties

Length: 153aa MW: 17846.4 Da PI: 7.6329

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO79222	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.2	7.2e-19	16	104	1	84
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+l psd++ +g l++ k+ a+e+ ++++++ ++l+ +d++g++W++++i+r++++r++ ++GW +Fv++++ +gD +vF + OMO79222 16 FCKTLRPSDTSIHGGLSVLKRRADECfppldmSMQPPK-QELVAKDLHGNEWRFEHIFRGQPRRHLVARGWGNFVSSKRPVAGDAFVFLR 104 99***************************9666666.49*********************************************84 PP
2	Auxin_resp	24.2	1.4e-09	103	129	57	83
Auxin_resp 57 rrlsGtvvgvsdldpvrWpnSkWrsLk 83 r s+t+vg +d+dpvrW +SkWr Lk OMO79222 103 LRSSATIVGYEDADPVRWMDSKWRFLK 129 57799*******************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence
MEPPLPPDPE FAIYSFCKTL RPSDTSIHGG LSVLKRRADE CFPPLDMSMQ PPKQELVAKD 60 LHGNEWRFEH IFRGQPRRHL VARGWGNFVS SKRPVAGDAF VFLRSSATIV GYEDADPVRW 120 MDSKWRFLKV RWDESMPRPL PERVSPWELE HFD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	1e-51	ARF family protein

Link Out ? help Back to Top
Ensembl	OMO79222