PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO79307

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 414aa MW: 46502.6 Da PI: 7.1412

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO79307	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.3	3.1e-17	137	182	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia++++ gRt+k+c++rw++ OMO79307 137 RGHWKPAEDSKLKELVALYGPQNWNLIAEKLQ-GRTGKSCRLRWFNQ 182 899***************************.*********996 PP
2	Myb_DNA-binding	55.3	1.5e-17	189	232	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++T+eE+e+l a++ +G++ W+ Iar ++ gRt++ +k++w+ OMO79307 189 KKAFTEEEEERLMAAHRAYGNK-WAMIARLFP-GRTDNAVKNHWHV 232 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MKMTLQQFHN SSCCHHQQNN GLCNWHSTTS IYAPPPSTSS MEVLQHMDSL SLSPNPNFHQ 60 LNVSSSSSHS AYNNDDDYYS NNKNIIIPAK SIENGFGENY NGAVSMEDIV MSRRIEGNFL 120 NGKDVVMGPS TSKLCARGHW KPAEDSKLKE LVALYGPQNW NLIAEKLQGR TGKSCRLRWF 180 NQLDPRINKK AFTEEEEERL MAAHRAYGNK WAMIARLFPG RTDNAVKNHW HVIMARKYRE 240 QATAYRRRKL TQVVQTKLED TNYNYGNLDY SPNNNKILGK LGAAISGGDL FLGSKSNNNS 300 FSQEEGEQAT QLPLDFFSDY RSQESFSSWN STRQYWKMLQ QDETWLSNDS QNSKMLMQLS 360 DVSESIASAS DQITAGTEPS SSSSPSAGTH FETPLITTTP SSPPFIDFLG VGAS

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MKMTLQQFHN SSCCHHQQNN GLCNWHSTTS IYAPPPSTSS MEVLQHMDSL SLSPNPNFHQ  60
LNVSSSSSHS AYNNDDDYYS NNKNIIIPAK SIENGFGENY NGAVSMEDIV MSRRIEGNFL  120
NGKDVVMGPS TSKLCARGHW KPAEDSKLKE LVALYGPQNW NLIAEKLQGR TGKSCRLRWF  180
NQLDPRINKK AFTEEEEERL MAAHRAYGNK WAMIARLFPG RTDNAVKNHW HVIMARKYRE  240
QATAYRRRKL TQVVQTKLED TNYNYGNLDY SPNNNKILGK LGAAISGGDL FLGSKSNNNS  300
FSQEEGEQAT QLPLDFFSDY RSQESFSSWN STRQYWKMLQ QDETWLSNDS QNSKMLMQLS  360
DVSESIASAS DQITAGTEPS SSSSPSAGTH FETPLITTTP SSPPFIDFLG VGAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	4e-75	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO79307