PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO79322

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 1161aa MW: 130867 Da PI: 8.7042

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO79322	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.1	2.3e-55	842	968	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 lppGfrFhPtdeel+++yL +kv ++ + + +i evd++k+ePwdLp k+k +ek+wyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ ++lvg OMO79322 842 LPPGFRFHPTDEELITHYLSQKVLNSCFCA-IAIGEVDLNKCEPWDLPWKAKMGEKQWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFK-AKTLVG 940 79*********************99888.78***********888999************************************.999* PP NAM 102 lkktLvfykgrapkgektdWvmheyrle 129 +kktLvfykgrapkgekt+Wvmheyrle OMO79322 941 MKKTLVFYKGRAPKGEKTNWVMHEYRLE 968 **************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 1161 aa Download sequence
MDPLPPLNKA YSLVIQQERS VLTSMSNPLE ITAMAVKGGP VPKKPFNNNS KRPVCSFCGK 60 EGHTIDKCYK KHGYPANYSV RNSKKPSTHQ GYANAVTMDD HDAALPSQDH AFAVPVPASQ 120 AIPYQFTKEQ YEQLIQMIQG ALSTHHQVNA VTMPSSSRAS SFSGPFLHHC DINPHISLNV 180 FNSSASTKNN EWVLDTGATD HIACTLEAFY SVRHVNDVYV HLPNKARVVV THIGTVRLNE 240 SLILSDVLYV PHFTFNLVSA VSCNKEESFL RHNRLGHPSF ERLKSLVPSV SSIDNCEEFN 300 DPDYFNAKGI IHQTSCVKTP QQNSVVERKH QHILNVARAL RFQAQLPIYF WDLPKGKVAI 360 GCKWVYRIKR KADGSIERYK ARLVAKGYTQ QEGIDFLDTF SPVAKMTTVR LLLSLAAIHG 420 WHLQQLDINN AFLHGDLEEE VYMKLPEGYS AEPNKVCRLI KSLYGLKQAS RQWNMKLTTT 480 LLSYGFHQSS ADHSLFIKKT TTSFTALLVY VDDCIIASNN FEEVLSIKEF LHNEFTIKDL 540 GEVKFFLGLE VARSDKGINL CQKKYTLDLL KEAWFLDAKP VPTPILPETR LSKEQGVPLE 600 DSTQYRKLIG KLQYLTTTRP DISFVVQQLA QFLDKPTNEH LIAVHRVLRY LKGTIGQGLF 660 FPTNSELKLT GYSDSDWGTC IDSRKSITRF CIFLGTSLIS WKSKKQNTVS RSSSEAEYRA 720 LASTACEIQW INYLLADFHV QLTPSTTPIF CDNKSAIYLA QNPTFHERSK HIEIDCHIVR 780 EKIQSGLIIL LPVSTKQQLA DCFTKGLSST NFATAFSKLE GNILEKMEKN YSFRKEDEQI 840 ELPPGFRFHP TDEELITHYL SQKVLNSCFC AIAIGEVDLN KCEPWDLPWK AKMGEKQWYF 900 FCVRDRKYPT GLRTNRATEA GYWKATGKDK EIFKAKTLVG MKKTLVFYKG RAPKGEKTNW 960 VMHEYRLEGK YSLYNLPKTA KNEWVICRVF QKSPGGKKIH IAGVTRLSSY GNNLPPLMDS 1020 SPHNSATRTG AGETSHVTCF SNPMEDQKAP DEMIDSFTSS FLASSSSSDI SPASILSTKT 1080 TLPNSAYTSQ IIPNIGNLQY SDSFWMQDQS ILKMLIESPR MSLKQNPKAE FSQDSVVSNP 1140 EMIQGPSSSP GPADLGCLWS Y

Sequence ? help Back to Top

Protein Sequence Length: 1161 aa Download sequence

MDPLPPLNKA YSLVIQQERS VLTSMSNPLE ITAMAVKGGP VPKKPFNNNS KRPVCSFCGK  60
EGHTIDKCYK KHGYPANYSV RNSKKPSTHQ GYANAVTMDD HDAALPSQDH AFAVPVPASQ  120
AIPYQFTKEQ YEQLIQMIQG ALSTHHQVNA VTMPSSSRAS SFSGPFLHHC DINPHISLNV  180
FNSSASTKNN EWVLDTGATD HIACTLEAFY SVRHVNDVYV HLPNKARVVV THIGTVRLNE  240
SLILSDVLYV PHFTFNLVSA VSCNKEESFL RHNRLGHPSF ERLKSLVPSV SSIDNCEEFN  300
DPDYFNAKGI IHQTSCVKTP QQNSVVERKH QHILNVARAL RFQAQLPIYF WDLPKGKVAI  360
GCKWVYRIKR KADGSIERYK ARLVAKGYTQ QEGIDFLDTF SPVAKMTTVR LLLSLAAIHG  420
WHLQQLDINN AFLHGDLEEE VYMKLPEGYS AEPNKVCRLI KSLYGLKQAS RQWNMKLTTT  480
LLSYGFHQSS ADHSLFIKKT TTSFTALLVY VDDCIIASNN FEEVLSIKEF LHNEFTIKDL  540
GEVKFFLGLE VARSDKGINL CQKKYTLDLL KEAWFLDAKP VPTPILPETR LSKEQGVPLE  600
DSTQYRKLIG KLQYLTTTRP DISFVVQQLA QFLDKPTNEH LIAVHRVLRY LKGTIGQGLF  660
FPTNSELKLT GYSDSDWGTC IDSRKSITRF CIFLGTSLIS WKSKKQNTVS RSSSEAEYRA  720
LASTACEIQW INYLLADFHV QLTPSTTPIF CDNKSAIYLA QNPTFHERSK HIEIDCHIVR  780
EKIQSGLIIL LPVSTKQQLA DCFTKGLSST NFATAFSKLE GNILEKMEKN YSFRKEDEQI  840
ELPPGFRFHP TDEELITHYL SQKVLNSCFC AIAIGEVDLN KCEPWDLPWK AKMGEKQWYF  900
FCVRDRKYPT GLRTNRATEA GYWKATGKDK EIFKAKTLVG MKKTLVFYKG RAPKGEKTNW  960
VMHEYRLEGK YSLYNLPKTA KNEWVICRVF QKSPGGKKIH IAGVTRLSSY GNNLPPLMDS  1020
SPHNSATRTG AGETSHVTCF SNPMEDQKAP DEMIDSFTSS FLASSSSSDI SPASILSTKT  1080
TLPNSAYTSQ IIPNIGNLQY SDSFWMQDQS ILKMLIESPR MSLKQNPKAE FSQDSVVSNP  1140
EMIQGPSSSP GPADLGCLWS Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-114	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO79322