PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO79327

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 388aa MW: 42648.2 Da PI: 6.5758

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO79327	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++++ G g+W++ +++ g+ R++k+c++rw +yl OMO79327 14 KGPWTPEEDQKLLAYIEENGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.9	8.7e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l OMO79327 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE ENGHGSWRAL PAKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120 IDPVTHKPKN DALLSSTDGQ SKNAANLSHM AQWESARLEA EARLVRESKL RNSHNSIHHH 180 LNPPPGFNLP PPTSSASASA SASTSAHLVT PKAWNTSYGL VAAADQLESP TSTLTFSENV 240 QIGVNSMPMI EFVGTSSSET GIIKEEGEQE WKFKEGIENS LSFSTSSLHD MTISMGGWTS 300 PDQSLRPTSN NNNDGHGNNN VGNVIEEVGF TNLLLNDSID RSLSDSGKDS DENSGSGGDG 360 SDYYEDNKNY WNSILNLVNS SPSDSPMF

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE ENGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPKN DALLSSTDGQ SKNAANLSHM AQWESARLEA EARLVRESKL RNSHNSIHHH  180
LNPPPGFNLP PPTSSASASA SASTSAHLVT PKAWNTSYGL VAAADQLESP TSTLTFSENV  240
QIGVNSMPMI EFVGTSSSET GIIKEEGEQE WKFKEGIENS LSFSTSSLHD MTISMGGWTS  300
PDQSLRPTSN NNNDGHGNNN VGNVIEEVGF TNLLLNDSID RSLSDSGKDS DENSGSGGDG  360
SDYYEDNKNY WNSILNLVNS SPSDSPMF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-123	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO79327