PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO79464

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 363aa MW: 41038.7 Da PI: 9.1441

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO79464	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.8	2.5e-13	4	43	8	48
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 d ll +avk+ ++Wk+Ia++++ gR++ qc +rwqk+l OMO79464 4 QDTLLTEAVKKCNARNWKKIAECVP-GRSDIQCLHRWQKVL 43 5889*******************.**********986 PP
2	Myb_DNA-binding	60.6	3.4e-19	49	95	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ + ++v+++G ++W+ Iar +g gR +kqc++rw+++l OMO79464 49 KGPWTKEEDDCITKLVAKYGCKRWSVIARLLG-GRIGKQCRERWYNHL 95 79****************************.***********97 PP
3	Myb_DNA-binding	55.7	1.2e-17	101	143	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +l+ +++ +G++ W+ Iar ++ gRt++ +k++w+ OMO79464 101 KDSWTEEEESILAYYHQIYGNR-WTEIARLLP-GRTDNAIKNHWN 143 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MDKQDTLLTE AVKKCNARNW KKIAECVPGR SDIQCLHRWQ KVLDPGVLKG PWTKEEDDCI 60 TKLVAKYGCK RWSVIARLLG GRIGKQCRER WYNHLDPSIR KDSWTEEEES ILAYYHQIYG 120 NRWTEIARLL PGRTDNAIKN HWNCTLKRKL GLCSPHCSST DTDKDGSSDF SDLLEIPSKC 180 MKFKGRVDLD ETISVYQNTT VNHSSAKCNL DLALGLAMVA DSSKARNCKS AGLANKQQIT 240 PVNAIDDSNM GFLRRNAKRS KILEQGQVDK DKESKNTSQY LLQNEPSQLN DSETAIFPIV 300 DDEDVHLKSS ICYSTPTKLA GSPILNSSSP ESILRISAMT FKNTPSIIRK RRYQRALNGN 360 KLV

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MDKQDTLLTE AVKKCNARNW KKIAECVPGR SDIQCLHRWQ KVLDPGVLKG PWTKEEDDCI  60
TKLVAKYGCK RWSVIARLLG GRIGKQCRER WYNHLDPSIR KDSWTEEEES ILAYYHQIYG  120
NRWTEIARLL PGRTDNAIKN HWNCTLKRKL GLCSPHCSST DTDKDGSSDF SDLLEIPSKC  180
MKFKGRVDLD ETISVYQNTT VNHSSAKCNL DLALGLAMVA DSSKARNCKS AGLANKQQIT  240
PVNAIDDSNM GFLRRNAKRS KILEQGQVDK DKESKNTSQY LLQNEPSQLN DSETAIFPIV  300
DDEDVHLKSS ICYSTPTKLA GSPILNSSSP ESILRISAMT FKNTPSIIRK RRYQRALNGN  360
KLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	4e-69	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO79464