PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO79852
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 28581.1 Da    PI: 4.9527
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO79852genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.66.8e-23959151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              k ie+++ r+vt+skRr+ +lKKA+E+SvLCd+e+ +i+fs tg++++y++
  OMO79852  9 KMIEDETHREVTLSKRRAELLKKAHEVSVLCDVEIGLILFSRTGEFFDYCT 59
              68***********************************************96 PP
2K-box39.52.4e-14801739100
     K-box   9 leeakaeslqqelakLkkeienLqreqRhllGed..LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
               ++ ++ + lq+ +  L+ e++ L+ ++ +l G d  L+s ++ eL++LeqqL+ s++k+R++K++ll+ ++ +l +  ++++ en++L + +ee
  OMO79852  80 THGQQGQDLQNMSGMLRTENQLLELSLNNLHGSDdqLNSRKYDELEELEQQLQFSINKVRARKEQLLKLEMGNLERNVEKMEVENNQLWQWIEE 173
               67788999****************999999996444****************************************************998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MGRSKIGMKM IEDETHREVT LSKRRAELLK KAHEVSVLCD VEIGLILFSR TGEFFDYCTH  60
HQSMEQIIEK YQLAKGITQT HGQQGQDLQN MSGMLRTENQ LLELSLNNLH GSDDQLNSRK  120
YDELEELEQQ LQFSINKVRA RKEQLLKLEM GNLERNVEKM EVENNQLWQW IEEQQASTRQ  180
QQVTNIDSNV FEQRQQEVLN QFPFLGEEQP ASLLQLVNQN PYRPYLLQPM QSDPQEANFH  240
HNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-31MIKC_MADS family protein