PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO79869

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 474aa MW: 53259.9 Da PI: 6.9418

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO79869	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.6	1.1e-13	303	348	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+r+N++f Lr+++P+ K++Ka+ L Av YIk+L OMO79869 303 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLSDAVAYIKEL 348 799*********************6.....5**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MSSTSSSLIT CAQETSPTLQ QRLQFIVQSR PEWWVYSIFW QASRDAHGHL VLSWGDGYFR 60 GTTRDFSGKS VNKLIQPKPK RSGKDLPTSL FNEEMDIQMD GGDVTDYEWY YTVSMTRSFA 120 IGDGILGRAF GSGSYVWLSG DEQFQLYECE RVRDARTRGI QTLVCLSTSF GVVELGSSEK 180 IEEDWGLVQL SKSIFGPEIN NCLGLNSNSK QPQVPISTSP RSVPFLDFGM VNSSADHQKE 240 WNILQQGGEA TTKKESTVFV RSSSDSEADS DGNFPSFTDR EFNARMKKRG RKPGTGKLES 300 PLNHVEAERQ RRERLNHRFY ALRSVVPNVS KMDKASLLSD AVAYIKELRS KVDELEGKLQ 360 LQSPKYSKLN AFDMQNSSTS TFESASPNYG VRTSMEVDVK IVGSEAMIRV QCPDVNYPAA 420 RLMDALRDLE LHVHHASISN VKELVLQDVV VRIPPGFISE DVLRTAILQR CRLN

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MSSTSSSLIT CAQETSPTLQ QRLQFIVQSR PEWWVYSIFW QASRDAHGHL VLSWGDGYFR  60
GTTRDFSGKS VNKLIQPKPK RSGKDLPTSL FNEEMDIQMD GGDVTDYEWY YTVSMTRSFA  120
IGDGILGRAF GSGSYVWLSG DEQFQLYECE RVRDARTRGI QTLVCLSTSF GVVELGSSEK  180
IEEDWGLVQL SKSIFGPEIN NCLGLNSNSK QPQVPISTSP RSVPFLDFGM VNSSADHQKE  240
WNILQQGGEA TTKKESTVFV RSSSDSEADS DGNFPSFTDR EFNARMKKRG RKPGTGKLES  300
PLNHVEAERQ RRERLNHRFY ALRSVVPNVS KMDKASLLSD AVAYIKELRS KVDELEGKLQ  360
LQSPKYSKLN AFDMQNSSTS TFESASPNYG VRTSMEVDVK IVGSEAMIRV QCPDVNYPAA  420
RLMDALRDLE LHVHHASISN VKELVLQDVV VRIPPGFISE DVLRTAILQR CRLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	309	314	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	9e-66	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO79869