PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO79871

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HD-ZIP

Protein Properties

Length: 241aa MW: 27763.7 Da PI: 5.2607

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO79871	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.1	4.2e-20	39	93	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le +Fe+++ p + +++LA++lgL+ rq+ +WFqNrRa+ k OMO79871 39 KNKRRFSDEQIKSLEFMFENDSRPESQIKQQLANELGLQPRQIAIWFQNRRARSK 93 67789************************************************99 PP
2	HD-ZIP_I/II	114.9	4.8e-37	40	131	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq+k+LE +Fe++++ e++ K++la+eLglqprq+a+WFqnrRAR k+kq+E+dy+ Lk++ydal+++ e+L++e+++Lr +l++ OMO79871 40 NKRRFSDEQIKSLEFMFENDSRPESQIKQQLANELGLQPRQIAIWFQNRRARSKSKQIERDYNILKESYDALASNYESLKRENQSLRIQLEK 131 79*************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MLARREQPHA AATVKLEVGL PGLDLDTFNP VQNIRPSSKN KRRFSDEQIK SLEFMFENDS 60 RPESQIKQQL ANELGLQPRQ IAIWFQNRRA RSKSKQIERD YNILKESYDA LASNYESLKR 120 ENQSLRIQLE KLKSQNEKEH GNKTCESNRS GNSGDCESQN RSGMLDTDEK ITFLFEGHDH 180 MLSTGNTSTS KKVENTDGDR VVLEMMEGTD GSLTSSEKWC SFESNCFLDE SSCSSNWWEY 240 W

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	96	RRARSKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	7e-43	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OMO79871