PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO79880

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

GRF

Protein Properties

Length: 541aa MW: 59066.5 Da PI: 8.2105

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO79880	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.5	2.7e-24	242	285	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rCrRtDGKkWRCsr+v +++k+CErH h++r rsrk++e OMO79880 242 DPEPWRCRRTDGKKWRCSRDVAPDQKYCERHSHKSRPRSRKPVE 285 79***************************************987 PP
2	QLQ	59.6	9e-21	187	221	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTaaQ+q+L++Q ++yKy++a++PvPpeLl++ + OMO79880 187 PFTAAQWQELERQTMIYKYMMASVPVPPELLLPFS 221 9******************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MTKMGTRNNN AFEKGLSGRE RDQLGVGLGL RMQQQQVDES CPNYKTTFIM PMSHHHHSSH 60 HNQFPSLPSP SSSSSCCCGS DIGFDGGAPY GGGGPIVCNT SHQVPCRGDI YDVVGASSVS 120 AAAAAVVLKS LHQPHPFSNA DPSFPHSSSG KLSSPFFLSS PFSFYFRHNN GLNAGEMAAA 180 PVNARVPFTA AQWQELERQT MIYKYMMASV PVPPELLLPF SRNPSNVMKG ALEIGFPSNS 240 SDPEPWRCRR TDGKKWRCSR DVAPDQKYCE RHSHKSRPRS RKPVELPNQN HSSINNINND 300 PKSHSLINFT SDTTKQSHHH HHFINQTFTS SFDQPRCLEW FMKGESTAAA PFAGNSNPEW 360 QQQFKTLGGG KYEGNVAEHQ QHFKDRRLNL QSHQHLNEQL VSPNLASLGG AGLNLNQAHS 420 QETRSFIDAW SDREVDGMGM GSKRRHSSNQ KLPLSSLTLS MSGGTNNGNN QEEDDDNGQV 480 GAFGFMGLAT ENVRALRPPH SQMANPGSWI GSPPGGPLAE ALCLGIASSQ STSTSSCSKS 540 T

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MTKMGTRNNN AFEKGLSGRE RDQLGVGLGL RMQQQQVDES CPNYKTTFIM PMSHHHHSSH  60
HNQFPSLPSP SSSSSCCCGS DIGFDGGAPY GGGGPIVCNT SHQVPCRGDI YDVVGASSVS  120
AAAAAVVLKS LHQPHPFSNA DPSFPHSSSG KLSSPFFLSS PFSFYFRHNN GLNAGEMAAA  180
PVNARVPFTA AQWQELERQT MIYKYMMASV PVPPELLLPF SRNPSNVMKG ALEIGFPSNS  240
SDPEPWRCRR TDGKKWRCSR DVAPDQKYCE RHSHKSRPRS RKPVELPNQN HSSINNINND  300
PKSHSLINFT SDTTKQSHHH HHFINQTFTS SFDQPRCLEW FMKGESTAAA PFAGNSNPEW  360
QQQFKTLGGG KYEGNVAEHQ QHFKDRRLNL QSHQHLNEQL VSPNLASLGG AGLNLNQAHS  420
QETRSFIDAW SDREVDGMGM GSKRRHSSNQ KLPLSSLTLS MSGGTNNGNN QEEDDDNGQV  480
GAFGFMGLAT ENVRALRPPH SQMANPGSWI GSPPGGPLAE ALCLGIASSQ STSTSSCSKS  540
T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	9e-29	GRF family protein

Link Out ? help Back to Top
Ensembl	OMO79880