PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO79988

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Nin-like

Protein Properties

Length: 933aa MW: 102665 Da PI: 6.4253

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO79988	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.4	6.9e-29	612	662	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ OMO79988 612 EKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 662 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 933 aa Download sequence
MDLDFMDELL FEGCWLEASD GFNFMQSGPS TATGLNDPSQ CLPISGGSNT APFGVNSHHQ 60 MPEGETEKKV FSNPSGSQIG DFSKSQSQNW AVGTSLSSPG NFIVEDTEMG SRWWIGPEAG 120 SGSASSVKER LMQAIGYLKE CTKERDVLIQ IWVPVKKEGK NVLTTEGQPY SLNTNCKSLE 180 FFRNASKSYS FPAEEDSKAV GLPGRVYLGK LPEWTPDVRF FKKNEYPRVD FAHQYNVGGS 240 LALPVFERGS GTCLGVVEIV TTSQKTNYHP ELEHVRKALE AVDLRSSHYF TQPSVKAYSE 300 LNHATLPEIA EVLRSACKTY NLPLALTWAP CVSHGKSGCR HSDENIYRCV STVDSACFVA 360 DENCHDFLEA CSEHHLFRDQ GIVGRAFTNN KQCFATDITS FSKTNYPLSH HARMFELRGA 420 VAIPLQSIFT GSTEFVLELF LPKDCHDSEA QKHMLNSLSS FMQQACQSLH VVMDKELEEE 480 VILPVKEMAV CSDGRSDREE IQFGTSSSKE SSPEESSWIA HMMEAQQKGK GVSVSWEYQK 540 EEPKEEFKMT SHWEDTQLEL YNKQVLSDFE HLHQNAGTKI SIEGGGADSS SSGGRRISSG 600 KRSGEKRRTK MEKTISLQVL RQYFAGSLKD AAKSIGVCPT TLKRICRQHG ITRWPSRKIK 660 KVGHSLRKLQ LVIDSVQGAE GAIQIGSFYS SFPELSSPNF SGNGPSSSLM ISDHSKPSEP 720 KLENGLFSQG AAAPKSPSSS CSQSSGSSTC CSTGAKQLST SINAVGSADG LPVEDPGGAL 780 KRALSDVDLH ALNVEAPKLL ARSQSHKTFG EHPNFETLLP PLPKTGGQNL RAGGTMRVKA 840 MFGEVKIRFS LQPSWGFREL QQEIAKRYNI EDVNRFDLKY LDDDNEWVLL TCDADLEECI 900 DIYKSSPSHT IKISIHQASN PNLGSSFGSS APL

Sequence ? help Back to Top

Protein Sequence Length: 933 aa Download sequence

MDLDFMDELL FEGCWLEASD GFNFMQSGPS TATGLNDPSQ CLPISGGSNT APFGVNSHHQ  60
MPEGETEKKV FSNPSGSQIG DFSKSQSQNW AVGTSLSSPG NFIVEDTEMG SRWWIGPEAG  120
SGSASSVKER LMQAIGYLKE CTKERDVLIQ IWVPVKKEGK NVLTTEGQPY SLNTNCKSLE  180
FFRNASKSYS FPAEEDSKAV GLPGRVYLGK LPEWTPDVRF FKKNEYPRVD FAHQYNVGGS  240
LALPVFERGS GTCLGVVEIV TTSQKTNYHP ELEHVRKALE AVDLRSSHYF TQPSVKAYSE  300
LNHATLPEIA EVLRSACKTY NLPLALTWAP CVSHGKSGCR HSDENIYRCV STVDSACFVA  360
DENCHDFLEA CSEHHLFRDQ GIVGRAFTNN KQCFATDITS FSKTNYPLSH HARMFELRGA  420
VAIPLQSIFT GSTEFVLELF LPKDCHDSEA QKHMLNSLSS FMQQACQSLH VVMDKELEEE  480
VILPVKEMAV CSDGRSDREE IQFGTSSSKE SSPEESSWIA HMMEAQQKGK GVSVSWEYQK  540
EEPKEEFKMT SHWEDTQLEL YNKQVLSDFE HLHQNAGTKI SIEGGGADSS SSGGRRISSG  600
KRSGEKRRTK MEKTISLQVL RQYFAGSLKD AAKSIGVCPT TLKRICRQHG ITRWPSRKIK  660
KVGHSLRKLQ LVIDSVQGAE GAIQIGSFYS SFPELSSPNF SGNGPSSSLM ISDHSKPSEP  720
KLENGLFSQG AAAPKSPSSS CSQSSGSSTC CSTGAKQLST SINAVGSADG LPVEDPGGAL  780
KRALSDVDLH ALNVEAPKLL ARSQSHKTFG EHPNFETLLP PLPKTGGQNL RAGGTMRVKA  840
MFGEVKIRFS LQPSWGFREL QQEIAKRYNI EDVNRFDLKY LDDDNEWVLL TCDADLEECI  900
DIYKSSPSHT IKISIHQASN PNLGSSFGSS APL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Ensembl	OMO79988