PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO80123

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 384aa MW: 43449.5 Da PI: 9.866

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO80123	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.7e-17	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll+ +vkq+G++ W++I+++mg ++R +k+c +rw +yl OMO80123 4 RQRWQPEEDALLKAYVKQYGPKEWNLISQRMGkpLNRDPKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	35.3	2.7e-11	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l + + +++G++ Wk+Ia++++ gRt+k + +w + OMO80123 59 KGSLTPEEQSLVISLQAKYGNK-WKKIASEVP-GRTAKRLGKWWEVF 103 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MKERQRWQPE EDALLKAYVK QYGPKEWNLI SQRMGKPLNR DPKSCLERWK NYLKPGIKKG 60 SLTPEEQSLV ISLQAKYGNK WKKIASEVPG RTAKRLGKWW EVFKEKQLKQ LQKKQGRKDF 120 SNSHQLEGNN ITSSSSNNSI IIPSVSSSPG QYDHILETFA EKYVQPNNSK FLSNYSAMNL 180 SPIMPVPPSI PLPDPDPVLS LGSGSSGTTA TTSSSVVLPL WMNNHTTSSL SSSTSSTTPS 240 PSVSLSLSPG EATGLDPDMG RFMPGQVGTL VQYCKELEEG RQSWMQHKKE ATWRLSRLEQ 300 QLESEKARKR REKMEEIEAK IRCLREEEVA FIGRMESEYK EQLSVLQRDA ETKEAKLMEA 360 WCSKHVKLAK LMEQIGFTSQ SPVP

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MKERQRWQPE EDALLKAYVK QYGPKEWNLI SQRMGKPLNR DPKSCLERWK NYLKPGIKKG  60
SLTPEEQSLV ISLQAKYGNK WKKIASEVPG RTAKRLGKWW EVFKEKQLKQ LQKKQGRKDF  120
SNSHQLEGNN ITSSSSNNSI IIPSVSSSPG QYDHILETFA EKYVQPNNSK FLSNYSAMNL  180
SPIMPVPPSI PLPDPDPVLS LGSGSSGTTA TTSSSVVLPL WMNNHTTSSL SSSTSSTTPS  240
PSVSLSLSPG EATGLDPDMG RFMPGQVGTL VQYCKELEEG RQSWMQHKKE ATWRLSRLEQ  300
QLESEKARKR REKMEEIEAK IRCLREEEVA FIGRMESEYK EQLSVLQRDA ETKEAKLMEA  360
WCSKHVKLAK LMEQIGFTSQ SPVP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	308	313	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	6e-59	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO80123