PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO80226

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 258aa MW: 29072.9 Da PI: 5.8756

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO80226	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.2e-08	151	198	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k + a +L + ++Y++sLq OMO80226 151 SHSLAERVRREKINEKMRCLQDLVPGC----HKTMGMAVMLDEIINYVHSLQ 198 8***********************9....788999**********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MGEFRQQLQG FIKPSQAMSE MEISMEMTKQ PSELNSTLLE NFSIADFSLE TLLAHQLPEF 60 PAISTHDNLS STVLAGSLTA IPMAQTVMVD EDVFVESKKR KAMEQSTSSN YQNISPARLG 120 KGKKGKNNEK EAEKVEEVIH VRARRGQATD SHSLAERVRR EKINEKMRCL QDLVPGCHKT 180 MGMAVMLDEI INYVHSLQNQ VEFLSMELAA ASSSYDLNME SECIKKAQGT NSHVAEQMEK 240 WARDRYGEQN GFHSTWPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	126	KKRKAMEQSTSSNYQNISPARLGKGKKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	5e-51	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO80226