PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO80285
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NF-YC
Protein Properties Length: 224aa    MW: 25573.5 Da    PI: 6.7847
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO80285genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC132.61.3e-4155154297
     NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
               l  fw +q   +++ + fk  h+lPlarikki+k+++ vkmisae+P+l+skacelfi+elt+r+wl++ee+krrtl+++dia a++++d+ dfl  ++ 
  OMO80285  55 LALFWYQQmmdMQNLSAFKnSHQLPLARIKKIMKSNKAVKMISAETPILFSKACELFIMELTVRAWLRTEEAKRRTLQRCDIARAISQADTLDFLDGVIK 154
               678****976677888899569************************************************************************976665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MDLNQAIEFD PSSTSSPQNN EFVPMTPLVL PSDQPPKEDV EEVQNSRLQL QKRSLALFWY  60
QQMMDMQNLS AFKNSHQLPL ARIKKIMKSN KAVKMISAET PILFSKACEL FIMELTVRAW  120
LRTEEAKRRT LQRCDIARAI SQADTLDFLD GVIKLKNHKD NGGNPAENDC HPVNQVQFPL  180
LDMNTEMIMR SPELQQLMMK IPMSSTQFNY GSASKGVEPA EKEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.18e-40NF-YC family protein