PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO80376

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 359aa MW: 39277.1 Da PI: 8.3018

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO80376	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.4	6.9e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ ++++v OMO80376 15 LPPGFRFHPTDEELVVHYLKKKASSAPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSgGTQKV 114 79**************************.88***********988899************************************9977788 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy g+ pkg kt+W+mheyrl OMO80376 115 GVKKALVFYGGKPPKGIKTNWIMHEYRL 142 **************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MESTDSSTGS QQPNLPPGFR FHPTDEELVV HYLKKKASSA PLPVAIIAEV DLYKFDPWEL 60 PAKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVLTSGG TQKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLADNKTNNK PPGCDIGKKN SLRLDDWVLC RIYKKNNTHR 180 PLDHDKDDSM DDMLGSLPPS MSIGSNARFQ LGITKGTSFG TLLESQEHCQ LFEGMMAAAA 240 ATSSDGINNT SSMSHLGCTS SSKPDLSLVN PLKRTLPSLY WTDDQDAAAG ASTSKRFHHG 300 GGDQSNDGSM EKTDGNGSIA TLLSQLPQTP PLQQQAMLGS MGDGIFRPPY QLPGLNWYT

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MESTDSSTGS QQPNLPPGFR FHPTDEELVV HYLKKKASSA PLPVAIIAEV DLYKFDPWEL  60
PAKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVLTSGG TQKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLADNKTNNK PPGCDIGKKN SLRLDDWVLC RIYKKNNTHR  180
PLDHDKDDSM DDMLGSLPPS MSIGSNARFQ LGITKGTSFG TLLESQEHCQ LFEGMMAAAA  240
ATSSDGINNT SSMSHLGCTS SSKPDLSLVN PLKRTLPSLY WTDDQDAAAG ASTSKRFHHG  300
GGDQSNDGSM EKTDGNGSIA TLLSQLPQTP PLQQQAMLGS MGDGIFRPPY QLPGLNWYT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-122	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO80376