PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO80429
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 558aa    MW: 62236.5 Da    PI: 8.3687
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO80429genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-14245343196
               EEEE-..-HH.HHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdv.lksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f+k++t sd+ l++grlvlpk++ae++    +    +++ l+++d++g+ We++++++ +s++  yvl+ G k++    + ++gD v+F+ +++ ++++v+
  OMO80429 245 FEKEMTASDAdLRNGRLVLPKRCAEAYfpkiS--GVQGIFLMVQDTRGNNWELYYRFWSNSNGkmYVLE-GLKDYILLMKCQAGDKVTFY-KREPDGKFVM 341
               899999999725669*************9554..458999****************9777777658887.********************.4447777776 PP

               EE CS
        B3  95 kv 96 
               ++
  OMO80429 342 GL 343
               65 PP
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    
MASSPDADTQ VCFHCESPSV NFFPGWPLRN GGYAMLCARC GAAFAGGTFC DTFHPKASGW  60
RDCASCKKRI HCGCIMAAHT FSILDFGGVK CAECSINEVL ALHPCSPSLG SPEAMQHNVG  120
SPEKSSLESA SRGKSDSFTP AVDINSGADP ILSQDSVDVL PNKIAIPTIP GAAFPVTSPL  180
SEIGEESSVN TPDQTNGSRQ KNGGKRRRRR NASKQAVQSR YYPKTTSEEL QEICRLSKSN  240
LIPLFEKEMT ASDADLRNGR LVLPKRCAEA YFPKISGVQG IFLMVQDTRG NNWELYYRFW  300
SNSNGKMYVL EGLKDYILLM KCQAGDKVTF YKREPDGKFV MGLKKGEAGK SDEKNQEPDI  360
VQMALFAAFI FTRRIIHFSC HHATIRLLIS CYPWAFFQQM MDMVLRAHMM FEKDFTPQIP  420
VRISCFVEGV EVLYTHAVIS QLTKYVVNLK KTSQPPCKAS LVIYSRNIVP FTTSRGFYSR  480
DRQLGMQIFQ RKGDNPMEER NSSLLELSTG VLCVTTVQDI LGTIIYELIK AMSKSCSMST  540
PCHMYVLSVK KDANEWYE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205210KRRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.14e-46B3 family protein