PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO80471
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 431aa    MW: 47027.4 Da    PI: 6.8006
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO80471genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.61.7e-063203581154
               HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                R +++ +++  L++l+ +      +K + a++L +A+eYIk+L
  OMO80471 320 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKYL 358
               5778999**********998.....8*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    
MADEFNTGTN WWDSSRSSTN NNSSRFDATG SSSSSSLGNF GWAATEMDLK AAGAAARSSM  60
DSVSSVSGSS VIQTGPDLHM MGLGLSSQPM DWNQAALLRG DKSDQTSFRS MLQDNLNSNA  120
NYQQESGHMG SSNQWRISDN QASVNDHQFK QISSSRGFSL DHHQSQFSPH GSSSDSTVTC  180
QGLPSSNFQM DSTALYGTPS TILQGILGSD HNQNQQQQSQ QSSINYYGMN SNEMLPSWSK  240
VPQFLRSSPP KQQQQQQQQL HGQLHFSNNA PFWNPSAASM ATDNISEVRD SSTVGKKSGN  300
EPASKRPRNE TPSPLPAFKV RKEKMGDRIT ALQQLVSPFG KTDTASVLSE AIEYIKYLHE  360
QVGVLSTPYM KTGAANAIQH QQNSEKPKDS EGPKQDLRSR GLCLVPVSST FPVTHESTVD  420
FWAPTFGGTF R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-81bHLH family protein