PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO80564
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 237aa    MW: 26039.6 Da    PI: 8.0421
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO80564genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.7e-1179126454
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               ++  rE+ RRdr+N++f eL  +l +    + +K +Ka+iL  Av+ + +L
  OMO80564  79 SKACREKLRRDRLNDKFMELGAILEPG---RPPKTDKAAILIDAVRMVTQL 126
               5678**********************8...89**************99988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MVSPESSNYW SHFDYGNLMD DVPVSDGPYS GFSWSTQPVN APTNVVSAEI DGALGDSDCI  60
KESGSKKRVR PESCNGTSSK ACREKLRRDR LNDKFMELGA ILEPGRPPKT DKAAILIDAV  120
RMVTQLRGET QKLKDSNSGL QERIKELKAE KNELRDEKQR LKAEKERLEQ QLKVMNAQPS  180
FMAPAPAIPA AFAAAQGQAP GNKLVPFIGY PGVAMWQFMP PAAVDTSQDH VLRPPVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-103bHLH family protein