PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO80773

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 248aa MW: 28544.2 Da PI: 6.0505

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO80773	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	9e-16	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +l++ ++ +G g+W++ +++ g++R++k+c++rw++yl OMO80773 15 KGAWTAQEDRILKEQIRVHGEGRWTKLSQKSGLRRSGKSCRLRWLNYL 62 79********************************************97 PP
2	Myb_DNA-binding	50.8	3.9e-16	68	111	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E+el+++ +k+lG++ W++Ia +++ gRt++++k++w + OMO80773 68 RGNITADEEELIIRMHKLLGNR-WSLIAGRLP-GRTDNEIKNYWKT 111 7999****************.*****.*********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MGRKPCYSNE EMMIKGAWTA QEDRILKEQI RVHGEGRWTK LSQKSGLRRS GKSCRLRWLN 60 YLRPDIKRGN ITADEEELII RMHKLLGNRW SLIAGRLPGR TDNEIKNYWK TKLGKKVDLL 120 SSIKIQSPLK YNGVLMNPQP LKPAGNSDES KTEAGQRDSD KFFMSNNIAN DMTPAFATQD 180 NNNNQSDFLL DFNLEDFHLL DHFDLDFSEF CNFSYSAIDH NDSVLPPSDD PLQVFCSETM 240 PELDPLEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	3e-52	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO80773