PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO81141

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

YABBY

Protein Properties

Length: 187aa MW: 21097.9 Da PI: 8.0109

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO81141	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	215.5	1.7e-66	6	160	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104 + ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q la ++ ++ + +++n+++ ++++ +++ s +n OMO81141 6 DVAAEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLAWQDI--------QAPNYAAQDHNYRMDLGSSSKCNNKFSIRPPATN 98 5679**********************************************9999995........4556666666777666666666666666665666 PP YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +ee v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl OMO81141 99 ATEERV----VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 160 666655....89**************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence
MSSCVDVAAE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLA 60 WQDIQAPNYA AQDHNYRMDL GSSSKCNNKF SIRPPATNAT EERVVNRPPE KRQRVPSAYN 120 QFIKEEIQRI KANNPDISHR EAFSTAAKNW AHFPHIHFGL MLETNNQNKL DDASEKHLMS 180 RTALLNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.1	2e-90	YABBY family protein

Link Out ? help Back to Top
Ensembl	OMO81141