PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO81277

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C3H

Protein Properties

Length: 352aa MW: 39551.4 Da PI: 7.1763

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO81277	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.7e-07	90	114	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f+ G C+ G+ C+FaHg OMO81277 90 FKTRMCAKFRM-GACRNGEGCNFAHG 114 69*******.***********9 PP
2	zf-CCCH	28.9	1.9e-09	150	173	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 +++lC+ f+ + +C+yGdrC+F H OMO81277 150 RMKLCKKFYNGEECPYGDRCNFLH 173 678*****66********** PP
3	zf-CCCH	40.4	4.8e-13	237	262	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC + tG+C++Gd+C+FaHg OMO81277 237 WKTKLCVKWETTGYCPFGDKCHFAHG 262 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MSYSDSFPSF GKPPQPTYPG SDAIGIWPEF GMNDGQFDPH SDFEQPQHQP PFKRPRHSDD 60 SQSNVLQCTP TNPRMPLNPP VNKGTTNIFF KTRMCAKFRM GACRNGEGCN FAHGVEDLRQ 120 PPPNWQELVG GREEERPAGN WDDDQRIIQR MKLCKKFYNG EECPYGDRCN FLHEDPSKFR 180 DDSGRFRECS AISIGTTAPP TGPVIPPDQL EVNRPVIVSN TVSDAFRGGN NMKPVYWKTK 240 LCVKWETTGY CPFGDKCHFA HGHTELQGFG GRVDGDLGNS GMPRNGSIST KIYNLPVNDA 300 PPVTATIPSI NEETQAKKCL FKWKGARKIN RIYGDWLDDM PLVHNLPNQV ES

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MSYSDSFPSF GKPPQPTYPG SDAIGIWPEF GMNDGQFDPH SDFEQPQHQP PFKRPRHSDD  60
SQSNVLQCTP TNPRMPLNPP VNKGTTNIFF KTRMCAKFRM GACRNGEGCN FAHGVEDLRQ  120
PPPNWQELVG GREEERPAGN WDDDQRIIQR MKLCKKFYNG EECPYGDRCN FLHEDPSKFR  180
DDSGRFRECS AISIGTTAPP TGPVIPPDQL EVNRPVIVSN TVSDAFRGGN NMKPVYWKTK  240
LCVKWETTGY CPFGDKCHFA HGHTELQGFG GRVDGDLGNS GMPRNGSIST KIYNLPVNDA  300
PPVTATIPSI NEETQAKKCL FKWKGARKIN RIYGDWLDDM PLVHNLPNQV ES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-104	C3H family protein

Link Out ? help Back to Top
Ensembl	OMO81277