PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO81484
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 164aa    MW: 18313.3 Da    PI: 9.9278
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO81484genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.2e-111968654
              HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
       HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
              + +Er+RR +++s  ++L +l+P+ ++k +++ +s  + L +A  YIk++
  OMO81484 19 KTIERNRRIQMKSLCFKLASLIPHhRFKSSKEIVSQQDQLDLAAVYIKYM 68
              689*********************999999999***************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MKKNNVNGGA VQASKPDRKT IERNRRIQMK SLCFKLASLI PHHRFKSSKE IVSQQDQLDL  60
AAVYIKYMRE TIEKLKEMKE QLIKSMEGSN CIMNKNGTAA VGLSFPVVEL RDLGSSIEVI  120
LISGLNKNFM LYEAISILEQ EGAEVVSASF STVGGKIFHT LHAQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-30bHLH family protein