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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OMO81678 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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| Family | MYB | ||||||||
| Protein Properties | Length: 337aa MW: 37000.3 Da PI: 5.0694 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 47.2 | 5.1e-15 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEd++l+++ G g+W+ +ar g+ R++k+c++rw +yl
OMO81678 28 KGLWSPEEDDKLINYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 75
678*******************************************97 PP
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| 2 | Myb_DNA-binding | 50 | 6.9e-16 | 81 | 124 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+++++E+e +v+++ lG++ W+ Ia++++ gRt++++k++w++
OMO81678 81 RGAFSPQEEEVIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 124
89********************.*********.***********97 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 337 aa Download sequence |
MMRKPDPTAV KGGINGGGSS SNTNKLRKGL WSPEEDDKLI NYMLTNGQGC WSDVARNAGL 60 QRCGKSCRLR WINYLRPDLK RGAFSPQEEE VIVHLHSILG NRWSQIAARL PGRTDNEIKN 120 FWNSTIKKRL KNLSSTPSPN ASDSSNSEPN KKDVMAAAGF MSSMQEQGIN FPMYMDLSST 180 SSTSNSSLQS MVLNQTCNSL APVLEHDLNM FGSAAAGYFN PAAASCVTQV GVNSDNFYGE 240 NEIFGSVDNG VEREIYVPPL ENIGENLKTE NTYDRNINNP FNIISSSNHN IKTENLAGGG 300 AAVGNIWLGE ELKVGEWDLE DLMKLDVSSL PFLDFQS |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G08500.1 | 2e-72 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OMO81678 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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