PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO81689
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 244aa    MW: 27805.7 Da    PI: 6.5209
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO81689genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.8e-1466118155
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               r+ +hn+ Er RR++ Ns ++ Lr llP a  a+ kKls  ++  +A +YI +Lq
  OMO81689  66 RKLNHNASERDRRRKFNSLYSSLRALLPAA--AQMKKLSFPATISHALKYIPELQ 118
               6889*************************6..5*******************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MCALAPYPIP SWPLVNPIGC YEQKYMYEGS ESIESLFLQL PPSQEEIHQV DDQSPSFNSC  60
DPGRVRKLNH NASERDRRRK FNSLYSSLRA LLPAAAQMKK LSFPATISHA LKYIPELQEE  120
VERLVEKKEK LLQRISQQGG LKLEEQKRKS RNGRNLGAAV SIEGLSESEV AIHITMAKAH  180
KKSDQLSEIL QYLEQDGMFL LLNATSFESF GGMVFYNIHL QVERIDNYKA ESEVLSEKLL  240
SLFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681DRRRKF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56980.12e-38bHLH family protein