PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO81696
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NF-YA
Protein Properties Length: 319aa    MW: 34429.9 Da    PI: 9.0289
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO81696genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1041.3e-32173229158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQyq+Il+RRq+Rak+e ekk+  ksrkpylheSRh+hA+rR+Rg+gGrF
   OMO81696 173 QEPVYVNAKQYQGILRRRQARAKAELEKKV-VKSRKPYLHESRHQHAMRRARGTGGRF 229
                69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MQSKSEGRSR LEPDPHGVPA NAVYSEPWWR NIGYGGISAG VRGGNASNSS SMECPNGSES  60
NDGQSLSNGG LNEDDDGNKE TQTTATSRSA GNGGQEHHNM QHVPSAIPAM RDECLTQPPQ  120
LELVGHSIAC ASNPYQDPFY GGMMAAYGHQ PLGYPPFVGM PHARMALPIE VAQEPVYVNA  180
KQYQGILRRR QARAKAELEK KVVKSRKPYL HESRHQHAMR RARGTGGRFA KKTDGDISKH  240
MAEEKGAGSG HTLSSHSPSS SGSEPVPADS AETWNSSLSR QEARVSQVHD KRHVNGSSHY  300
QNRGGSISAN PSHRPLAIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.14e-89NF-YA family protein