PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO81708
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 226aa    MW: 25597.4 Da    PI: 10.3072
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO81708genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.49e-241765149
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              k+i+ k n qvtfskRr+g++KKA+ELS+LC+++va+i+fs+ +k++ +
  OMO81708 17 KKIDKKNNLQVTFSKRRTGLFKKASELSTLCGVDVAIIVFSPANKVFSF 65
              6899*****************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MVMKKNMIQG RQKIAMKKID KKNNLQVTFS KRRTGLFKKA SELSTLCGVD VAIIVFSPAN  60
KVFSFGHPNV ESTVDRFLTR NPSLLHNNNN NNVTHKLVEA HRNANIHQLN VQLTQLLEML  120
EGEKRKGEAL DGMTEAGRRQ CWWHAPIDEL GLNELQQLRI SLEELKRNVK KQANQALVQS  180
TNWWPILASN GINGEGVSIF KNNQGNDEMN FALGITQMYN CGQGLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-49M-type_MADS family protein