PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO81796
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C2H2
Protein Properties Length: 351aa    MW: 37944.1 Da    PI: 7.3519
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO81796genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022236258123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               ++C++Cg  Fs+   L  H+r+H
  OMO81796 236 HECSICGAEFSSGQALGGHMRRH 258
               78********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MMMEGVHHVH VDQEEVVVCN KDQLQIIKGK RTKRPRPMSP LTLAMVSSST TTTSSSGGGG  60
DGEGDKNSIT DDSSRGFDHD HHQAFTASPT TSDVSTEEED QDMANCLILL AQGGGSTTTQ  120
TRIKPVSALG AGAKTNKTAA VAVAAVAGNG IYAHQCKTCN RCFPSFQALG GHRTSHKKPN  180
NKLNEENKGS LVFLKEDDDQ HHNRFNNMNM NTTLSLQISN NNHNKGVVLC NKPKVHECSI  240
CGAEFSSGQA LGGHMRRHRT LVTNNSNVPT ATATATTCLS VGITTSSSPE SDIVHDHDQS  300
NKKPRTVLQL DLNLPAPEDH DHHHQRESKF SFASKEKLLV FSASSLVDCH Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13337KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-50C2H2 family protein