PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO81805
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB
Protein Properties Length: 238aa    MW: 28106.2 Da    PI: 5.2383
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO81805genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-181663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEde+l+  vk+lG+++W+ +ar  g++R++k+c++rw++yl
         OMO81805 16 KGPWHEEEDERLITFVKLLGSRRWDYVARVSGLKRSGKSCRLRWLNYL 63
                     79********************************************97 PP
2Myb_DNA-binding51.32.7e-1673114548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++eE+++++++++++G++ W+ Iar+++ gRt++++k++w+++l
         OMO81805  73 SAEEEKIILQLHERWGNK-WSMIARKLP-GRTDNEIKNYWRTHL 114
                      89****************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MAYETAAAMQ GESLRKGPWH EEEDERLITF VKLLGSRRWD YVARVSGLKR SGKSCRLRWL  60
NYLRPNIKHG HISAEEEKII LQLHERWGNK WSMIARKLPG RTDNEIKNYW RTHLRKKEMI  120
QEQENFQFGR DNGRQLFLFQ GECSRVQNYN AESYKPCDDI LDTENRSYEA VGQSDFNLTS  180
SPYETRLSDW ISSEFPSDQS EIISQEDCNS TDSCYCYPSW VSQENDLWGC SDSLWNME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.16e-65MYB family protein