PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO82052

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 300aa MW: 32088.5 Da PI: 4.5232

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO82052	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	273	296	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ Cg+sF + L++H + H OMO82052 273 FACKSCGRSFGSDNALQSHSKAkH 296 78*****************88766 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MEFWGAEVKS GQNFVVELDR GSGKIVHLSQ VALGEVTGDN KKEKGNEVCV YIKVKDSKFV 60 IGTLSHEKFP HIPLDLVLDD KFQLSHNWKN GSVHFTGYYA EINEETCDPA DKEPAVQATE 120 SGPTTSKQVK IVEPNKDEDS SSSSDEEDSS SDSDDEESSD DEQAGMLVNG ENESDDDDES 180 DSSDEDSSDE DSSDEDEQTP KKAETSKKRP AESATKTPVP EKKAKLVTPQ KTDGKKVGGH 240 TATPHPSKKA GKAEAGSGQA KQNQKSGGSS SSFACKSCGR SFGSDNALQS HSKAKHGAAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	2e-28	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO82052