PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO82091
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 217aa    MW: 23725.4 Da    PI: 4.8811
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO82091genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.34.4e-143584155
       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              + ykGVr  k++g+Wv+e+r+ps+   + r++lg+f ++ +Aa+a +aa+++l+g
  OMO82091 35 PVYKGVR--KRNGKWVSELREPSK---QSRIWLGTFSSPRKAARADDAAALALKG 84
              68****6..779*********965...5***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MKRSNMEPKL EVGSSSAQSQ KRKAGRKKFQ ETRHPVYKGV RKRNGKWVSE LREPSKQSRI  60
WLGTFSSPRK AARADDAAAL ALKGDSASFN FPELASTLPR ACSSSIRDIQ LAAVEAAEAF  120
EDSTVSKSTS SPSPSLSSSP SSSPPPPLPC LETSSDVNVE KGSEKLYLDE EEVFNMPGIL  180
DSMAEGLIVT PPAMQKGYYN WDDDDEDDSV EFSLWGD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.12e-34ERF family protein