PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO82099

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

GRF

Protein Properties

Length: 414aa MW: 45707.6 Da PI: 9.1164

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO82099	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	81.2	9e-26	143	186	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e OMO82099 143 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHIHRGRNRSRKPVE 186 79***************************************997 PP
2	QLQ	50.6	5.7e-18	75	111	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+y+y++a+ vP+eLlq+i+k OMO82099 75 SYFSLAQWQELELQALIYRYMLAGFDVPQELLQPIKK 111 79*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MDLHLKQWRN NQHESDSEQH QPSAKIPKLL LDHHQQYPSA SSALPLFVPA EPNSSKTLSA 60 VPPDHSNPRF PRMGSYFSLA QWQELELQAL IYRYMLAGFD VPQELLQPIK KSLVHSPSYF 120 LHHPLQHYSH YQPAWYWGRA AMDPEPGRCR RTDGKKWRCS RDVVAGQKYC ERHIHRGRNR 180 SRKPVEMPTS STPNNTTTTT MTNNNTTTAP FGGALGGDVG ATIGCGGALN KASSPITASP 240 LVGMANRANN NNFGLSRPSP PIDLLHLNHS NSDSKNEHKS LFEAPNEVKN RSDGHILRHF 300 FDDWPRSVQE PENSRTNTNP MNSSTCLSIS MPGNGNSSSD VSLKLSTGNG DPRDNARDHQ 360 PQLNWANGWS SNPVASMGGP LAEALRSSTS NSSPTSVLHQ LPRGSASETS YVST

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MDLHLKQWRN NQHESDSEQH QPSAKIPKLL LDHHQQYPSA SSALPLFVPA EPNSSKTLSA  60
VPPDHSNPRF PRMGSYFSLA QWQELELQAL IYRYMLAGFD VPQELLQPIK KSLVHSPSYF  120
LHHPLQHYSH YQPAWYWGRA AMDPEPGRCR RTDGKKWRCS RDVVAGQKYC ERHIHRGRNR  180
SRKPVEMPTS STPNNTTTTT MTNNNTTTAP FGGALGGDVG ATIGCGGALN KASSPITASP  240
LVGMANRANN NNFGLSRPSP PIDLLHLNHS NSDSKNEHKS LFEAPNEVKN RSDGHILRHF  300
FDDWPRSVQE PENSRTNTNP MNSSTCLSIS MPGNGNSSSD VSLKLSTGNG DPRDNARDHQ  360
PQLNWANGWS SNPVASMGGP LAEALRSSTS NSSPTSVLHQ LPRGSASETS YVST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	5e-89	GRF family protein

Link Out ? help Back to Top
Ensembl	OMO82099