PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO82386
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 282aa    MW: 32126.7 Da    PI: 6.5117
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO82386genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.81.2e-4151402128
       NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
               +pGfrF Pt+eelv++yL++k+e+k+     +++++i++v+iy+++P dLp+      ++e+++w+fF+++++ +a+g r+nr t +gyWkatg+   v+s
  OMO82386   5 APGFRFYPTEEELVSFYLHHKLERKRedlnRTMDQFIPTVNIYEFNPCDLPQlswyLSHKETEQWFFFVPKQEGEARGGRPNRLTPNGYWKATGSPGFVYS 105
               69**********************997775555567***************6677533445669************************************9 PP

       NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
               + +++ +g k+t+vfy grap+g+kt+W m+ey++
  OMO82386 106 SsNNRPIGFKRTMVFYYGRAPNGSKTEWKMNEYKV 140
               877888***************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MENIAPGFRF YPTEEELVSF YLHHKLERKR EDLNRTMDQF IPTVNIYEFN PCDLPQLSWY  60
LSHKETEQWF FFVPKQEGEA RGGRPNRLTP NGYWKATGSP GFVYSSSNNR PIGFKRTMVF  120
YYGRAPNGSK TEWKMNEYKV IDESAPHPSD AATPPTLDEF CLCRIYKKTK CVRSFDRRPV  180
RAAGRGRVLQ ICDLPQPRAA DNHRQGDQVT LGAIGAASND QQSGSPLVAE RNMSSSQDSS  240
SSGDHGNNIY GQTGESSNTS SPLMFDYDES FWCLDGFWEN IP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-60NAC family protein