PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO82525

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

E2F/DP

Protein Properties

Length: 495aa MW: 54395.6 Da PI: 4.9972

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO82525	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	84.9	6.3e-27	170	235	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+g+++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg OMO82525 170 RYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIHWKG 235 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MSGGAGATAR PTPPHPPPHP AAASPQVPTG PSIVPPIRRH LAFASTKPPF VHPDDYHRFS 60 LNNGTNNNNL TSATDTRVVS ADQEVEAIVV RSPQLKRKST VDNNEVESRQ WTSSPGVTSI 120 SNSPFQTPVS AKGGRTNNRS KASKANKSTP QTPISNAGSP APLTPAGSCR YDSSLGLLTK 180 KFINLIKQAE DGMLDLNKAA ETLEVQKRRI YDITNVLEGI GLIEKKLKNR IHWKGFDASR 240 PGDADGDVSI LQAEIENLSM EEHRLDDQIR EMQERLRDLS ENQDNQKWLF VTEDDIKALP 300 CFENETLIAI KAPHGTTLEV PDPDEAVDYP QRRYRIILRS TMGQIDVYLV SQFEEKFEDA 360 NGVEPPAAVP LASSSGSNEN HVEMVNAEST RKKVEPQAQQ THQTNSDIIA SQESVGGMMR 420 IVPSDIDNDA DYWLLSDAAD VSITDIWKTD SGVEWSGVDM LHADFGMADI STPRPQTPPS 480 RVIDIPPSDF NSMRR

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MSGGAGATAR PTPPHPPPHP AAASPQVPTG PSIVPPIRRH LAFASTKPPF VHPDDYHRFS  60
LNNGTNNNNL TSATDTRVVS ADQEVEAIVV RSPQLKRKST VDNNEVESRQ WTSSPGVTSI  120
SNSPFQTPVS AKGGRTNNRS KASKANKSTP QTPISNAGSP APLTPAGSCR YDSSLGLLTK  180
KFINLIKQAE DGMLDLNKAA ETLEVQKRRI YDITNVLEGI GLIEKKLKNR IHWKGFDASR  240
PGDADGDVSI LQAEIENLSM EEHRLDDQIR EMQERLRDLS ENQDNQKWLF VTEDDIKALP  300
CFENETLIAI KAPHGTTLEV PDPDEAVDYP QRRYRIILRS TMGQIDVYLV SQFEEKFEDA  360
NGVEPPAAVP LASSSGSNEN HVEMVNAEST RKKVEPQAQQ THQTNSDIIA SQESVGGMMR  420
IVPSDIDNDA DYWLLSDAAD VSITDIWKTD SGVEWSGVDM LHADFGMADI STPRPQTPPS  480
RVIDIPPSDF NSMRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36010.1	0.0	E2F/DP family protein

Link Out ? help Back to Top
Ensembl	OMO82525