PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO82656
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 238aa    MW: 27353.3 Da    PI: 8.3796
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO82656genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.46.2e-14117221196
               EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS.SEE. CS
        B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr.sefe 91 
               f+k+lt sdv ++ +rl+l k  +++        + +++e++ ++++d++g+++ +++i + +s+ +vl++GW +F++++gL    Dfv++ + ++ +++ 
  OMO82656 117 FEKQLTESDVKSNqCRLSLNKIDVQNAvnpllkeEDDPTEGIPVKVYDSNGKEYPMTFITW-CSKIHVLKEGWINFCNDHGLVaYQDFVTLWVFRNkKTGG 216
               99*********999**********555******988999*******************655.55689***************9668999998766656666 PP

               .EEEE CS
        B3  92 lvvkv 96 
               l++ +
  OMO82656 217 LCFVI 221
               66655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MENSKGNEDG YSEECRDFYL AALRLCSFKL EKISNETVKK LHELKTKYSF GEKEEAKSNE  60
PKTPEKSNPA EEIRRLNSAK NWSETPKFRL SLSSNFPPEM PPVACLKGLI GNCSKPFEKQ  120
LTESDVKSNQ CRLSLNKIDV QNAVNPLLKE EDDPTEGIPV KVYDSNGKEY PMTFITWCSK  180
IHVLKEGWIN FCNDHGLVAY QDFVTLWVFR NKKTGGLCFV ITSRRLEVFE AIKRRKLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.12e-25B3 family protein