PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO82910

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

LBD

Protein Properties

Length: 180aa MW: 19543.2 Da PI: 6.4839

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO82910	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.1	8.5e-45	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la++++e OMO82910 8 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQTE 107 7**********************************************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence
MGGSGSSPCA SCKLLRRRCA KDCIFAPYFP SDDPHKFAIV HKVFGASNVS KMLQELPVQQ 60 RADAVSSLVY EANARVRDPV YGCVGAISYL QNQVSQLQMQ LAVAQTEMLC IQMQQESSSS 120 TAGALPPTQL IDQDIDKSFL LAAATANNFD SISSQYLNFG SSSNVNVIQD PALKRESLWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-81	LBD family protein

Link Out ? help Back to Top
Ensembl	OMO82910