PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO83005

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Protein Properties

Length: 908aa MW: 100018 Da PI: 6.4068

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO83005	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.7	5.2e-19	333	432	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f+kvl++sd+++ grlvlpk +ae++ +++ e++ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ +++lv++++ OMO83005 333 FEKVLSHSDAGRIGRLVLPKACAEAYfpPISQSEGVPLRIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLRAGDTVTFSRID-PGGKLVMGFR 431 99************************666778999***********99899999999.*******************887.7887888877 PP - CS B3 98 r 98 + OMO83005 432 K 432 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 908 aa Download sequence
MGSKICMNSS CGTATTHEWK NGWPLRSGGF APLCYRCGSA YEDNVYCDTF HLEESGWRDC 60 RLCGKRIHCG CIASDYMFEL LDYGGVGCTS CAKRSRLHSI RRIQTHGDEI PNGFGALPIT 120 NARSSSAESK VVGDHVDDRT LAQLCKIMEA NELNLLPQSQ TGDTNSSIGQ PRGEEVICPV 180 AEVGSSFSNA MQQFVLTSNF AKAEDAKPSL DIRDIHDSLS QPSLSMTLGG PSGNPNFVLP 240 FSSGLADGKE QSKTSPSFQQ GQRSRPILPK PSKNGLGTSP EVNKSVVPQA RIARPPVEGR 300 GKNHLLPRYW PRITDQELQQ LSGDLKSTIV PLFEKVLSHS DAGRIGRLVL PKACAEAYFP 360 PISQSEGVPL RIQDVKGKEW MFQFRFWPNN NSRMYVLEGV TPCIQSMQLR AGDTVTFSRI 420 DPGGKLVMGF RKATNTDTQE GQTSSLPNGA HSGETSHPGG FENLPSTSAY SGLFQTPKGG 480 KDPLVNALSE HLSLADGNIS WGRGESHGDG ANEDPFQQTS ANAEKKRTRN IGSKSKRLLM 540 HSEDALELRL TWEEAQDLLR PPPSVKPSIV TIEDHEFEEY DEPPVFGKRT IFAARPSGGQ 600 EQWAQCDDCS RWRRLAVDVL LPPKWTCSDN VWDTSRCSCS APEEISPKEL ENLLRVGRDL 660 KKRKILESPN LAPEREPSGL DALASAAVLG DKMGDLVGES SVGATTKHPR HRPGCTCIVC 720 IQPPSGKGKH KPTCTCNVCM TVRRRFKTLM LRKKKRQSEH EAEISQKDNN EQKDESEPNE 780 TRQDQSENEG SQSRIQAEVA ESSTGQIDLN CHPNREDLQL EESGLNMMSL VEAATMPMAI 840 DNYTKQNGLP SLTSEQQDSV GSHLPSQANR DKERHLSDEE FLASVGWERD NRNDQGPKEP 900 SLERNGDH

Sequence ? help Back to Top

Protein Sequence Length: 908 aa Download sequence

MGSKICMNSS CGTATTHEWK NGWPLRSGGF APLCYRCGSA YEDNVYCDTF HLEESGWRDC  60
RLCGKRIHCG CIASDYMFEL LDYGGVGCTS CAKRSRLHSI RRIQTHGDEI PNGFGALPIT  120
NARSSSAESK VVGDHVDDRT LAQLCKIMEA NELNLLPQSQ TGDTNSSIGQ PRGEEVICPV  180
AEVGSSFSNA MQQFVLTSNF AKAEDAKPSL DIRDIHDSLS QPSLSMTLGG PSGNPNFVLP  240
FSSGLADGKE QSKTSPSFQQ GQRSRPILPK PSKNGLGTSP EVNKSVVPQA RIARPPVEGR  300
GKNHLLPRYW PRITDQELQQ LSGDLKSTIV PLFEKVLSHS DAGRIGRLVL PKACAEAYFP  360
PISQSEGVPL RIQDVKGKEW MFQFRFWPNN NSRMYVLEGV TPCIQSMQLR AGDTVTFSRI  420
DPGGKLVMGF RKATNTDTQE GQTSSLPNGA HSGETSHPGG FENLPSTSAY SGLFQTPKGG  480
KDPLVNALSE HLSLADGNIS WGRGESHGDG ANEDPFQQTS ANAEKKRTRN IGSKSKRLLM  540
HSEDALELRL TWEEAQDLLR PPPSVKPSIV TIEDHEFEEY DEPPVFGKRT IFAARPSGGQ  600
EQWAQCDDCS RWRRLAVDVL LPPKWTCSDN VWDTSRCSCS APEEISPKEL ENLLRVGRDL  660
KKRKILESPN LAPEREPSGL DALASAAVLG DKMGDLVGES SVGATTKHPR HRPGCTCIVC  720
IQPPSGKGKH KPTCTCNVCM TVRRRFKTLM LRKKKRQSEH EAEISQKDNN EQKDESEPNE  780
TRQDQSENEG SQSRIQAEVA ESSTGQIDLN CHPNREDLQL EESGLNMMSL VEAATMPMAI  840
DNYTKQNGLP SLTSEQQDSV GSHLPSQANR DKERHLSDEE FLASVGWERD NRNDQGPKEP  900
SLERNGDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	743	754	RRRFKTLMLRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	0.0	B3 family protein

Link Out ? help Back to Top
Ensembl	OMO83005