PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO83061
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB
Protein Properties Length: 464aa    MW: 51862.3 Da    PI: 6.7967
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO83061genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-162067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l ++vk++G g+W+++ +  g+ R++k+c++rw ++l
         OMO83061 20 KGPWTAAEDSILMEYVKRHGEGNWNAVQKNSGLMRCGKSCRLRWANHL 67
                     79******************************************9986 PP
2Myb_DNA-binding40.56.3e-1373126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqk 46 
                      +g++++eE+ +++d++++lG++ W++ a+ +           gRt++++k++w++
         OMO83061  73 KGSFSPEEETIIIDLHAKLGNK-WARMAAQIHvfdflhmqlPGRTDNEIKNYWNT 126
                      799*******************.******************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    
MMRSNSGVES SDHIGHGLKK GPWTAAEDSI LMEYVKRHGE GNWNAVQKNS GLMRCGKSCR  60
LRWANHLRPN LKKGSFSPEE ETIIIDLHAK LGNKWARMAA QIHVFDFLHM QLPGRTDNEI  120
KNYWNTRMKR RQRAGLPIYP QDQDHQAVGD AGFLFQQRTH KEQEQGRKRP NYYYYNNTSS  180
SNYHLLSSSQ PKRQCDFTNF SLLDSMNLSS AGAGAGQNQA VSSFYSNLNH RQYLKLHHHD  240
SNTNTADTDH LYNKENIITT AAQAQTPLFI NSGNTFSSLL MGMGTTQTVD FVPPGPGLKP  300
AELIASSYQT PPAPLVQPTA TASSSGTGNP NTNKFLYKEH TSGLLDSLLA ESRSLSFRNQ  360
RNQTNCEDFP HAPTLEEEEE DGDKCVDLGN QWDEFSSSHS SIGVKVGDES IEETNSMDDD  420
LLSLLNNFPS SMPLPEWYNK TNRPSNGSSS SAYMSTVRSS LDVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.25e-74MYB family protein