PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO83215

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Protein Properties

Length: 542aa MW: 61127.5 Da PI: 8.1159

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO83215	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.9	1e-14	432	516	5	93
-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ++p +v k r+++pkk + +++ kt l+ + ++W v + r+ + + +++kGW +Fv +n+L+e D++vF+l+++ ++e+ OMO83215 432 MKPCHVCKDFRVTIPKKWQIPIsDSV----KTTLLKVpPGEKTWPVSI--RRLRTSKLMQKGWAKFVLDNNLEEHDVCVFELNEEGNTECI 516 56778889999****975553333....24444553677***..9999999**********************9876555544 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MSSSDPNKLI SKADKLTKLS LTRWSADWKS ATLLYEQAAN AFRVAKDYEK AKLAFEKAST 60 GQEMLSSPWD AAKHMENAAG LAKELRNWTE VIDFYRKASE LYMQCDRPQP ASDALAKGAR 120 AVEDVKPDDA IQLYTDACVI LEDDGKEQMA FDLYRAATSV YVKLEKYTDA AAFLLRLGLA 180 ADKCNARNSQ CKAYLSAIIV YLYAHDLKQA EKCYNDCNQI DAFLSSDQNR CASKLLAAYT 240 EGDVEEIKRV AQSSTISNLD NVVNFLHFCV WKCMSLSHNI VDDHKARKKV ADRQNGACSS 300 NARRVSQKEN GENLDKLKKS RGNPSSKPVP PSREKQPAVG KSAAATEGIE EVSMDESEEE 360 DSVSSMEASE DWSDESVSLK KCKSKTKQGK TKRSYHMYYV SNRRVITEEE KQRPCELARL 420 HSSTRPYGSI LMKPCHVCKD FRVTIPKKWQ IPISDSVKTT LLKVPPGEKT WPVSIRRLRT 480 SKLMQKGWAK FVLDNNLEEH DVCVFELNEE GNTECIVLNV IIFRVVDEIV PLTVFKPSYP 540 RN

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MSSSDPNKLI SKADKLTKLS LTRWSADWKS ATLLYEQAAN AFRVAKDYEK AKLAFEKAST  60
GQEMLSSPWD AAKHMENAAG LAKELRNWTE VIDFYRKASE LYMQCDRPQP ASDALAKGAR  120
AVEDVKPDDA IQLYTDACVI LEDDGKEQMA FDLYRAATSV YVKLEKYTDA AAFLLRLGLA  180
ADKCNARNSQ CKAYLSAIIV YLYAHDLKQA EKCYNDCNQI DAFLSSDQNR CASKLLAAYT  240
EGDVEEIKRV AQSSTISNLD NVVNFLHFCV WKCMSLSHNI VDDHKARKKV ADRQNGACSS  300
NARRVSQKEN GENLDKLKKS RGNPSSKPVP PSREKQPAVG KSAAATEGIE EVSMDESEEE  360
DSVSSMEASE DWSDESVSLK KCKSKTKQGK TKRSYHMYYV SNRRVITEEE KQRPCELARL  420
HSSTRPYGSI LMKPCHVCKD FRVTIPKKWQ IPISDSVKTT LLKVPPGEKT WPVSIRRLRT  480
SKLMQKGWAK FVLDNNLEEH DVCVFELNEE GNTECIVLNV IIFRVVDEIV PLTVFKPSYP  540
RN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	1e-15	B3 family protein

Link Out ? help Back to Top
Ensembl	OMO83215