PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO83264
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NF-YA
Protein Properties Length: 202aa    MW: 22083.2 Da    PI: 8.716
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO83264genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.42.1e-32108164158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep++VNaKQy++Il+RRq+Rak+e+e+k   ksrkpylheSRh hAlrR+RgsgGrF
   OMO83264 108 EEPVFVNAKQYHGILRRRQSRAKAESENKA-VKSRKPYLHESRHLHALRRARGSGGRF 164
                69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MTSSGHDLSD NNEVDEQQKH SDSEDQSSSP ATGLSHSAIT TPSIPYTTSQ HAVAPAAYPY  60
PDPYYRSIFA PYDAQPYPPQ PYSGQPMVHL QLMGIQQAGV PLPSDAVEEP VFVNAKQYHG  120
ILRRRQSRAK AESENKAVKS RKPYLHESRH LHALRRARGS GGRFLNAKKN KNDQNGAASG  180
DKSSNINLNS DKNEVASVEG TS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-57NF-YA family protein