PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO83572
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 230aa    MW: 25307.1 Da    PI: 7.1654
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO83572genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.21.5e-213383155
       AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f++aeeAa+a++aa+++l+g
  OMO83572 33 PRYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEEAARAYDAAARSLRG 83
              68********.**********883....5*************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MRRGRGAAAA AAAAATAVAT KPAVEHNGSI KEPRYRGVRK RPWGRFAAEI RDPWKKTRVW  60
LGTFDSAEEA ARAYDAAARS LRGPKAKTNF PINSSNIPAF PFENHHHNNE GFIDHHRLYP  120
MGDFQDPEVN PQRPTRSSMS STVESFSGPR PAQPPQISSD FAVVSTRNYQ PRPSPVVMPD  180
EDCHSDCDSS SSVIDDGDIA SSSCRKTLPF DLNFPPLDEV DDLQCTALCL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.14e-38ERF family protein