PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO83746
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NF-YB
Protein Properties Length: 185aa    MW: 19682 Da    PI: 6.9469
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO83746genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.34e-5726121297
     NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
               reqdrflPianvsrimkk+lPanakisk+aketvqecvsefisf+t+easdkcq+ekrktingddllwa++tlGfedyveplk yl+++relegek
  OMO83746  26 REQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKGYLQRFRELEGEK 121
               89********************************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MADSDTESGG AQKNTTGNNS DLSSPREQDR FLPIANVSRI MKKALPANAK ISKEAKETVQ  60
ECVSEFISFI TGEASDKCQK EKRKTINGDD LLWAMTTLGF EDYVEPLKGY LQRFRELEGE  120
KTAVARDKDV PLGSASVGVG GGAGGMYGMM VPQHHQGHVY GSSGFHQIGS GLGKGGSGNN  180
LGGPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.14e-70NF-YB family protein